PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05522
Common NameKK1_005659
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 558aa    MW: 61389.7 Da    PI: 5.1864
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05522genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.13.8e-1351805421374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv++L++cAeav+ g+++la al+++  +la+++g +m ++a++f++ALa+r+++        + p et +++ s++l+++  f+e sP+lkf+h+
  C.cajan_05522 180 LVHALMACAEAVQLGNASLAGALVKHAGTLAASQGGSMGKVASFFAQALARRIYG--------FYPHETLDSTYSDTLHMH--FYESSPYLKFAHF 265
                    689****************************************************........667777777788888885..************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    taN+aIlea++ +e++H+iDf+++qGlQWpaL+qaLa Rp+gpp +R+Tg+g+p+ +  ++++l+++g +La++A++++v+fef+ lv+++l+dl+
  C.cajan_05522 266 TANHAILEAFAAAETIHVIDFGLKQGLQWPALMQALAVRPGGPPAFRLTGIGPPRLDdtDSDALSQVGLKLAELARTIKVRFEFRGLVCNSLTDLD 361
                    ******************************************************999999************************************ PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    ++ L+++pgE++aVn v++lhrll++++++es    vL ++k ++P++++vveqea+hn++ Fl+rf+eal+yys+lfdsle ++++ see+ +++
  C.cajan_05522 362 PSVLEIRPGESVAVNAVFELHRLLARPGAIES----VLATIKMMKPEIITVVEQEANHNEPVFLDRFTEALYYYSSLFDSLEGSAAAPSEEALVMS 453
                    ********************************....************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++lgr+i+nvvaceg+er+erhetl++Wr rl++aG++pv+l+++a  qak+ll  +  ++gyrvee++g+l+lgW++rpLv++SaWr
  C.cajan_05522 454 EMYLGRQICNVVACEGEERVERHETLGQWRGRLGSAGLEPVRLGSNAFRQAKMLLGLFReGEGYRVEENNGCLMLGWHTRPLVATSAWR 542
                    ****************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120416.1E-293094IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.5E-2730100No hitNo description
PROSITE profilePS5098566.902154521IPR005202Transcription factor GRAS
PfamPF035141.3E-132180542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MKRERVEDAR GECSSSAKGK KMCEEEERED KLLAGVGYKV CSSDMADVAQ KLEQLEMVMD  60
EDGIPHLPTD TVHYDPTDLY GWVQNILTEI NNNNDNALNH TTVNALLPSP FIADSENDLR  120
AIPLPYVQAY PQPENQIQNQ NHYKRFKSSS SSSPLSPAVS SISSENALPV VLVEEAGVHL  180
VHALMACAEA VQLGNASLAG ALVKHAGTLA ASQGGSMGKV ASFFAQALAR RIYGFYPHET  240
LDSTYSDTLH MHFYESSPYL KFAHFTANHA ILEAFAAAET IHVIDFGLKQ GLQWPALMQA  300
LAVRPGGPPA FRLTGIGPPR LDDTDSDALS QVGLKLAELA RTIKVRFEFR GLVCNSLTDL  360
DPSVLEIRPG ESVAVNAVFE LHRLLARPGA IESVLATIKM MKPEIITVVE QEANHNEPVF  420
LDRFTEALYY YSSLFDSLEG SAAAPSEEAL VMSEMYLGRQ ICNVVACEGE ERVERHETLG  480
QWRGRLGSAG LEPVRLGSNA FRQAKMLLGL FREGEGYRVE ENNGCLMLGW HTRPLVATSA  540
WRLAPAEFTR WVRVGKMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6617454113378Protein SCARECROW
5b3h_A4e-6617454112377Protein SCARECROW
5b3h_D4e-6617454112377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208530.10.0DELLA protein GAI
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A151U1850.0A0A151U185_CAJCA; DELLA protein GAI1
STRINGXP_007141902.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein