PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_05108 | ||||||||
Common Name | KK1_005237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 26876.9 Da PI: 8.0794 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H C.cajan_05108 49 YSCTFCKREFRSAQALGGHMNVH 71 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.17E-6 | 46 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.8E-4 | 47 | 74 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0065 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.177 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-6 | 49 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MHVKREQTLK PYLEAEVEDD NKNYSWEERA FAEDAARIVG GSMWPPRSYS CTFCKREFRS 60 AQALGGHMNV HRRDRARLKQ NLSPHNNYHE NEPLHRHNKN GFKSLLGNHF SASTQIDCGL 120 AAYYSSPATT IASTRQFEIC GQHSLSPYSS FSSIIFGQKN NTEYKFNGLG CDNHVETSLS 180 VGLTSSPTVD RANINCKRCS KSNDKQRLAF QPEEILLGLD RGMEDLDLEL RLGKQQS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-13 | 44 | 71 | 2 | 29 | superman protein |
2l1o_A | 3e-13 | 44 | 71 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_05108 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CR954191 | 5e-38 | CR954191.3 Medicago truncatula chromosome 5 clone mte1-26e13, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020228392.1 | 1e-180 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A151TZZ5 | 1e-179 | A0A151TZZ5_CAJCA; Putative transcriptional regulator RABBIT EARS | ||||
STRING | XP_007141854.1 | 8e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37740.1 | 7e-29 | zinc-finger protein 10 |