PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_05041

Common Name

KK1_005168

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 229aa MW: 26026.7 Da PI: 9.9641

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_05041	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	2e-06	84	103	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ C.cajan_05041 84 FSCPVCLKTFNRYNNLQMHM 103 89*****************9 PP
2	zf-C2H2	12.2	0.00057	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+ k + ++H +++ C.cajan_05041 168 FTCRKCGKPLAVKGDWRTHEKNC 190 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.71E-5	79	106	No hit	No description
PROSITE profile	PS50157	10.18	84	111	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.5E-6	84	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.35E-5	153	188	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MNQNQLQPLP LLSSFLGSSP REALLQNQNH KACEDVTVAL HIGLPDNSSG STTNNHGFVS 60 DTTQVPNNYW IPTQEQILIG FSHFSCPVCL KTFNRYNNLQ MHMWGHGSQY RRGPDSLKRT 120 HPRPLLDIPC YCCARGCKNN IEHPRAKPLK DFRTLQTHYK RKHGSKPFTC RKCGKPLAVK 180 GDWRTHEKNC GKRWLCICGS DFKHKRSLKD HIKAFGFGHS PFSSSSEAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	119	DSLKRT

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_05041

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ311808	0.0	AJ311808.1 Glycine max partial mRNA for WIP1 protein (WIP1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020228175.1	1e-172	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-97	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A151TZS4	1e-171	A0A151TZS4_CAJCA; Protein TRANSPARENT TESTA 1
STRING	GLYMA14G35140.1	1e-155	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	9e-95	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]