PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04734
Common NameKK1_004854
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 514aa    MW: 57712.1 Da    PI: 6.3427
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04734genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-084334711854
                    HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  C.cajan_04734 433 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 471
                    5887779******************************88 PP
2BELL67.82.1e-22303374172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    er++ ++ k++Ll ll+ Vd+rY+ + ++++tv+s+F+a+++l++  +++++Al++i+  ++ L+++i+++i
  C.cajan_04734 303 ERHATESNKSQLLVLLQLVDNRYSECLDEIHTVVSAFHAATELDPHIMHAHFALQTITLLYKDLRERISNHI 374
                    78999****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.4E-15225372IPR006563POX domain
PfamPF075263.7E-24231371IPR006563POX domain
PROSITE profilePS5007110.932412475IPR001356Homeobox domain
SMARTSM003896.9E-6415479IPR001356Homeobox domain
CDDcd000866.31E-11415476No hitNo description
SuperFamilySSF466892.05E-15417484IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-26418481IPR009057Homeodomain-like
PfamPF059208.0E-15432471IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MENNMYSAPL DMAGRISTAI EEITQHLAPK PLVHCYSFDL NNQSHIIDGI PVLAGGEQGE  60
PTSDVHVDGC FINPATIADS NSFIASQGKT VVGDASNPIN NNDFHEHLAG GRPITSASLA  120
ARISLQENLE NSSAALPPSF CSLEAIGPYI FNNWQEIQTW IKMDGHRQIN ELSLSLARSP  180
TTGQCSEMSC SDVSNRMNVT TMSGLEQPSC SSKDLSMRLD SNKHVQFSPA ILGSRYLAGI  240
QEILTQIATY SFENVELMNY SVAGVRAGGN NNSASAFTPK RRVAINQNAN SMFEAHVEES  300
PLERHATESN KSQLLVLLQL VDNRYSECLD EIHTVVSAFH AATELDPHIM HAHFALQTIT  360
LLYKDLRERI SNHILAMGPD FNSLCSEEEK EWCVETSFIQ KQWALQQLKR KDHLWRPQRG  420
LPERSVSVLR AWMFQNFLHP YPKDAEKHLL AVKSGLTRSQ VSNWFINARV RLWKPMIEEM  480
YAEMNRRKAC RNEEGMESTH RSRLSMNNQM LNIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14421479563Homeobox protein Meis2
3k2a_B2e-14421479563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04734
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020208840.10.0homeobox protein ATH1
RefseqXP_020208846.10.0homeobox protein ATH1
RefseqXP_020208857.10.0homeobox protein ATH1
RefseqXP_029129924.10.0homeobox protein ATH1
SwissprotP487311e-103ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A151TYY10.0A0A151TYY1_CAJCA; Homeobox protein ATH1
STRINGXP_007160994.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-105homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]