PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_04176 | ||||||||
Common Name | KK1_004277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 374aa MW: 40522.4 Da PI: 7.6737 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 2 | 22 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k Fs+ L H+r H C.cajan_04176 2 CQICNKGFSSGKALGGHLRIH 22 *******************99 PP | |||||||
2 | zf-C2H2 | 16.7 | 2.1e-05 | 54 | 75 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C CgksF + +L H+r+H C.cajan_04176 54 TCALCGKSFCSMKSLFGHMRSH 75 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.49E-8 | 1 | 75 | No hit | No description |
SMART | SM00355 | 15 | 1 | 22 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 1 | 27 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-7 | 2 | 22 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 2 | 22 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.889 | 53 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.038 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 54 | 75 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.2E-5 | 55 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 226 | 244 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.02 | 227 | 245 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 180 | 288 | 310 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MCQICNKGFS SGKALGGHLR IHNVSRKQLS RANQGVTKPK TKNKWVLVSG NNPTCALCGK 60 SFCSMKSLFG HMRSHPEKLR RGIQSIIHNN GASSNSTCSS TLSDDSAVDL SQTLSGWSKT 120 AKRGRKSPSS SNANSGLEDD GIEERMQEAV YELMLLASGD PKREEELHGD QIQEKPLNCE 180 KGLLLLKPDF GNSGVKKIYR KKGAKKMKSI ELEAAEEENK LVRSGLCNTT FSSHQALEGH 240 LCSHENSKNI EVMEESESVS ATGDRTTMQG NETGTVLGGC AVEAMRGYQC KIFNKTFSIG 300 PAFGDHKGSH WTGMAEAQSA QETSSLVENG QNCSKVLAFD LNQPPAILDE EDGVQSDLFV 360 SVNIMASSSY NSSF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_04176 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020228069.1 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | A0A151STA4 | 0.0 | A0A151STA4_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA16G18060.1 | 1e-145 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 7e-14 | C2H2 family protein |