PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_04097 | ||||||||
Common Name | KK1_004196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 117aa MW: 13395.2 Da PI: 10.8277 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.6e-05 | 19 | 41 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C + F+++ L H++ H C.cajan_04097 19 FQCRYCRRQFPNSQALGGHQNAH 41 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.84E-6 | 16 | 46 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-4 | 17 | 45 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.344 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MKLFGFPLKA EEVIANRSFQ CRYCRRQFPN SQALGGHQNA HKRERAKLAQ FKYLRRLRQH 60 HDRFKNEPKD LLKPTLVVAS ATSSTHAAQP FFQFHGAGGD HVDLNLTLAC SSNNFNN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_04097 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006601397.1 | 1e-35 | zinc finger protein 6 | ||||
Refseq | XP_028210628.1 | 1e-35 | zinc finger protein 6-like | ||||
TrEMBL | A0A151ST22 | 2e-81 | A0A151ST22_CAJCA; Zinc finger protein 7 | ||||
STRING | GLYMA17G03461.1 | 5e-35 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3903 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 4e-13 | zinc finger protein 7 |