PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_03656
Common NameKK1_003736
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 526aa    MW: 57057.3 Da    PI: 8.2184
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_03656genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14148207155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  C.cajan_03656 148 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 207
                    57*******************666664477446**********99*************98 PP
2AP247.25.5e-15250301155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  C.cajan_03656 250 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 301
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-21148217No hitNo description
SuperFamilySSF541715.17E-17148217IPR016177DNA-binding domain
PfamPF008479.2E-12148207IPR001471AP2/ERF domain
PROSITE profilePS5103218.927149215IPR001471AP2/ERF domain
SMARTSM003806.1E-29149221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-15149216IPR001471AP2/ERF domain
PRINTSPR003672.2E-6150161IPR001471AP2/ERF domain
CDDcd000181.10E-24250311No hitNo description
SuperFamilySSF541717.19E-18250311IPR016177DNA-binding domain
PfamPF008476.8E-10250301IPR001471AP2/ERF domain
PROSITE profilePS5103219.045251309IPR001471AP2/ERF domain
SMARTSM003801.5E-33251315IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18251310IPR001471AP2/ERF domain
PRINTSPR003672.2E-6291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDSSSPPSHN NTNSLPFSLS NHFQNPSSSS SSSSSPLSLF HSFTYPSLTL TGSTTVDASP  60
EATAAGATNL SIFTGAPKFE DFLGGSATCA PPQLPQFSTD NNNNNLYDSE LKTTIAACFP  120
RGFAAEATAE PQKPSPKKTV DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG  180
RQVYLGGYDK EDKAARAYDL AALKYWGPTT TTNFPISNYE KELDEMKNMT RQEFVASLRR  240
KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  300
GLNAVTNFDM SRYDVKSIAN STLPIGGLSS KNKNNNDSVS ESKSHEASRS DERDPSSASS  360
VTFGSQSQQQ QPPSSSTLSF AIPIKQDPSD YWSVLGYNHS HNPLSLERNT TSVVTSASFP  420
CSNNASNNNV TATPFHMEFS SAPSSTGSDN NGAFFSGGMF VHQQQSGSSG SSLSCSIPFA  480
TPIFSLNSNA SYESSGGYGN WIGPSLHTFQ SHAKASLFQT PIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_03656
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310930.0KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228902.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-145AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A151SRV60.0A0A151SRV6_CAJCA; AP2-like ethylene-responsive transcription factor AIL5
STRINGGLYMA13G00950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-138AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]