PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_02238 | ||||||||
Common Name | KK1_002291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LBD | ||||||||
Protein Properties | Length: 292aa MW: 33299.2 Da PI: 6.029 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.4 | 1.6e-35 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkC+++C lap fpa+qpk f nvhklFG+sn++k+lk l+++++++am+s++ +A+ r + Pv+G+ + i +lq q+ +++el++ C.cajan_02238 10 ACAACKHQRRKCTSECLLAPFFPADQPKVFLNVHKLFGVSNIVKILKILEPSQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWVMEEELHA 105 7*********************************************************************************************99 PP DUF260 97 lkee 100 + ++ C.cajan_02238 106 VYQQ 109 9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.368 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-34 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MTLKGGTTQA CAACKHQRRK CTSECLLAPF FPADQPKVFL NVHKLFGVSN IVKILKILEP 60 SQKKIAMDSI IIQANYRDKY PVHGCWEEIC RLQYQIWVME EELHAVYQQL EICRQQHHQG 120 PSMHDDVASQ LELGMTPRTS NALPLFNHHT PQPQPQPHTY NTVALSVSQQ QQHSYSNSNS 180 VDYNSLYLDS KDNTTNPLWV QYSYANNNSN SVGMDTQFSS QPLAIQQNVV EDYDEIHPIF 240 DSVDDRQSYI YSKEAYESSS EESLKDMRKC TDHVSENELK SAAACFSLTS VN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-26 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-26 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_02238 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-118 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020225931.1 | 0.0 | LOB domain-containing protein 27 | ||||
TrEMBL | A0A151SMQ2 | 0.0 | A0A151SMQ2_CAJCA; LOB domain-containing protein 27 | ||||
STRING | XP_007155357.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 4e-45 | LOB domain-containing protein 27 |