PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_02058 | ||||||||
Common Name | KK1_002109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 163aa MW: 17973.2 Da PI: 9.2329 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H C.cajan_02058 32 FQCHFCHRKFYTSQALGGHQNAH 54 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.44E-6 | 28 | 59 | No hit | No description |
PROSITE profile | PS50157 | 10.72 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MADPATIYEF LKQQPSSGAK RAAPPATTTR TFQCHFCHRK FYTSQALGGH QNAHKLERAA 60 ARRTTVNINV PFHNNNGPLP LKPTDPKPRP EPLEPASPPT GLFFHHPPYW LDVEPLQFQT 120 THVTATLPLP FHAPSPSPSP SPSASSHNVD ASEHVNLDLT LRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_02058 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235167 | 3e-38 | AC235167.1 Glycine max strain Williams 82 clone GM_WBb0001A17, complete sequence. | |||
GenBank | AC235270 | 3e-38 | AC235270.1 Glycine max strain Williams 82 clone GM_WBb0045N21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020225205.1 | 1e-115 | zinc finger protein KNUCKLES | ||||
TrEMBL | A0A151SM82 | 1e-114 | A0A151SM82_CAJCA; Zinc finger protein KNUCKLES | ||||
STRING | XP_007161660.1 | 4e-55 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16293 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 5e-14 | C2H2 family protein |