PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_01670
Common NameKK1_001708
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28670.5 Da    PI: 4.7481
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_01670genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-193386356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   k+++++++q++ Le+ Fe+++++  +++++LAk lgL+ rqV +WFqNrRa++k
  C.cajan_01670 33 KKRRLSANQVQFLEKSFEEENKLEPDRKTKLAKDLGLQPRQVAIWFQNRRARWK 86
                   56689************************************************9 PP
2HD-ZIP_I/II126.61.1e-4032124193
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    ekkrrls++qv++LE+sFeee+kLep+rK++la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++ + L ke+++L++++++
  C.cajan_01670  32 EKKRRLSANQVQFLEKSFEEENKLEPDRKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLHATFQTLKANYDLLLKEKDNLKAQVAS 124
                    69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.82E-192090IPR009057Homeodomain-like
PROSITE profilePS5007117.2972888IPR001356Homeobox domain
SMARTSM003895.9E-193192IPR001356Homeobox domain
CDDcd000862.36E-173389No hitNo description
PfamPF000469.8E-173386IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-203595IPR009057Homeodomain-like
PRINTSPR000318.5E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000318.5E-66884IPR000047Helix-turn-helix motif
PfamPF021832.5E-1488128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVSFEGEGGS KGSLFQGYDL EENGDEYFHH PEKKRRLSAN QVQFLEKSFE EENKLEPDRK  60
TKLAKDLGLQ PRQVAIWFQN RRARWKTKQL EKDYDTLHAT FQTLKANYDL LLKEKDNLKA  120
QVASLTETVL ARGMQEQELK LQGESETKGS DMSSKCEGSK VSSHVGGCKQ EDISSGRSDI  180
LDSHPADSSY AFDPDQSDVS LSQDEQDNLT HNLYPSYLFP KLEEVHYSDP AQTSCNFGFP  240
EEDHALWTWA Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_01670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020225655.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022832e-42HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A151SKY40.0A0A151SKY4_CAJCA; Homeobox-leucine zipper protein HAT5
STRINGGLYMA05G01390.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-44homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]