PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00610
Common NameKK1_000629
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27290.3 Da    PI: 4.6297
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00610genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-18254456
                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   ++++t+eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k
  C.cajan_00610  2 KRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 54
                   5589***********************************************98 PP
2HD-ZIP_I/II130.27.9e-42192293
    HD-ZIP_I/II  2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                   kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy aLk++yd+lk + e+L +e+++L++e+++
  C.cajan_00610  1 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGALKASYDRLKGDYESLVQENDKLKAEVNS 92
                   8**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.2E-14160IPR001356Homeobox domain
CDDcd000867.07E-17157No hitNo description
PROSITE profilePS5007118.139156IPR001356Homeobox domain
SuperFamilySSF466891.54E-18265IPR009057Homeodomain-like
PfamPF000468.7E-16254IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-19363IPR009057Homeodomain-like
PRINTSPR000313.1E-62736IPR000047Helix-turn-helix motif
PROSITE patternPS0002703154IPR017970Homeobox, conserved site
PRINTSPR000313.1E-63652IPR000047Helix-turn-helix motif
PfamPF021836.6E-185697IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
KKRRLTSEQV QFLERNFEVE NKLEPERKVQ LAKELGLQPR QVAIWFQNRR ARFKTKQLEK  60
DYGALKASYD RLKGDYESLV QENDKLKAEV NSLESKLILR GKEKENLDDK SSPDAVNSPH  120
KEPMDLISNS NATSENGTKV SLPIMVTCKQ EDANSTKSDV LDSDSPHCTS FVEPADSSHA  180
FEPEHSDFSQ DEEDNLSENL LTLPCLPKVE EPCYDHPPEN SCNFGFQVED QTFCFWPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14856RRARFKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026050.0AF402605.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157405.11e-159hypothetical protein PHAVU_002G067200g
SwissprotQ022831e-42HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A151SI821e-175A0A151SI82_CAJCA; Homeobox-leucine zipper protein HAT5 (Fragment)
STRINGXP_007157405.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-45homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]