PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa28725s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 53aa MW: 5866.32 Da PI: 4.8026 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.3e-07 | 15 | 52 | 3 | 38 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlk 38 +WT+ d+++ a + + + +W +ar +g g++++ Csa28725s010.1 15 SWTPKQDKQFEMALATYDQDtpdRWQNVARAVG-GKSAE 52 7*****************99*************.**987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.22E-9 | 10 | 52 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-5 | 15 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.55E-5 | 16 | 53 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 53 aa Download sequence Send to blast |
MASNSISTSR SSNSSWTPKQ DKQFEMALAT YDQDTPDRWQ NVARAVGGKS AEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa28725s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010414205.1 | 1e-31 | PREDICTED: protein RADIALIS-like 4 | ||||
Refseq | XP_010497931.1 | 5e-32 | PREDICTED: protein RADIALIS-like 3, partial | ||||
Swissprot | Q1A173 | 1e-17 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A315A6X6 | 2e-24 | A0A315A6X6_PRUYE; Protein RADIALIS-like 4 | ||||
STRING | XP_010414205.1 | 4e-31 | (Camelina sativa) | ||||
STRING | XP_010497931.1 | 2e-31 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36570.1 | 3e-19 | RAD-like 3 |