PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa25214s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 57aa MW: 6623.53 Da PI: 10.5717 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 24 | 57 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 rg W Ed +l ++v+ G+ +W+ Ia+ m+ gR Csa25214s010.1 24 RGHWRISEDTQLMELVAVNGPQNWNHIAENMQ-GR 57 79999***************************.98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.378 | 19 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-7 | 21 | 57 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-8 | 22 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-7 | 24 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-4 | 27 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
MQKKSDDDLK KKKKKQSGSR VCSRGHWRIS EDTQLMELVA VNGPQNWNHI AENMQGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa25214s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB025615 | 3e-57 | AB025615.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K5K13. | |||
GenBank | AF272732 | 3e-57 | AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds. | |||
GenBank | CP002686 | 3e-57 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010502910.1 | 6e-34 | PREDICTED: transcription factor MYB35 isoform X1 | ||||
Refseq | XP_010502911.1 | 3e-34 | PREDICTED: transcription factor WER isoform X2 | ||||
TrEMBL | D7LM74 | 8e-23 | D7LM74_ARALL; MYB110 | ||||
STRING | XP_010502910.1 | 2e-33 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6300 | 18 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.1 | 5e-23 | myb domain protein 110 |