PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa22301s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 86aa MW: 9554.66 Da PI: 7.8484 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 6.1e-08 | 15 | 36 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+f+ G C+yGd+C++ H+ Csa22301s010.1 15 KVCNFWVD-GNCSYGDKCRYLHC 36 68******.*************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.01E-7 | 11 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 11 | 38 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-5 | 13 | 37 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-5 | 14 | 36 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-6 | 15 | 33 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 1.41E-7 | 32 | 85 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 2.8E-8 | 34 | 86 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 8.2E-5 | 42 | 81 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 12.947 | 49 | 86 | IPR017986 | WD40-repeat-containing domain |
PROSITE profile | PS50082 | 14.051 | 49 | 86 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 68 | 82 | IPR019775 | WD40 repeat, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 86 aa Download sequence Send to blast |
WGRFGGNRTV TKTEKVCNFW VDGNCSYGDK CRYLHCWSKG DSFSLLTQLD GHEKLVSGIA 60 LPSGSDKLYT GSKDESLRVW DCASGQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa22301s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB015478 | 1e-116 | AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15. | |||
GenBank | AJ252064 | 1e-116 | AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene). | |||
GenBank | CP002688 | 1e-116 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444176.1 | 8e-55 | PREDICTED: zinc finger CCCH domain-containing protein 63-like | ||||
Refseq | XP_010444177.1 | 8e-55 | PREDICTED: zinc finger CCCH domain-containing protein 63-like | ||||
Refseq | XP_010444179.1 | 8e-55 | PREDICTED: zinc finger CCCH domain-containing protein 63-like | ||||
Swissprot | Q9FNZ1 | 2e-54 | C3H63_ARATH; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | R0EU03 | 4e-53 | R0EU03_9BRAS; Uncharacterized protein | ||||
STRING | XP_010444176.1 | 3e-54 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51980.1 | 8e-57 | C3H family protein |