PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g081050.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 479aa MW: 54020 Da PI: 6.5239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g081050.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2.1e-12	311	356	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N++f Lr ++P+ K++K + Le Av+YI++L Csa20g081050.1 311 NHVEAERMRREKLNHRFYALRAVVPNV-----SKMDKTSLLEDAVRYINEL 356 799*********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.2E-50	35	231	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	1.13E-13	306	357	No hit	No description
PROSITE profile	PS50888	16.806	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-17	307	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-10	311	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-16	311	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-14	313	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MNTDDNLSMI EALLTSDLWP PLPPANHYLS LETTLQKRLH AVLSGTHEPW TYAIFWKPSY 60 FDLSGESVLK WGDGVYNGDD EEKTGRRLRR TIKKTILSSP EEKERRSKVL RELNSMISGE 120 PFPVVEEEDA KDDIDDVVEV TDTEWFFLVS MTWTFGNGSG LPGKAFTTYN PVWVTGSDQI 180 YGSGCDRAKQ GGGLGLQTIV CIPSHNGVLE LGSTEHIRQN SDLFNKIRFL FSFEGSKDCS 240 GAPTSVQFPS SVHKYSNTNP NPVSQPIQIH FSGEERKRSS DDWMDETVIP EKKPGKKRGR 300 KPMHGREKPL NHVEAERMRR EKLNHRFYAL RAVVPNVSKM DKTSLLEDAV RYINELKSTA 360 ENAESEKNAV QNQLNELKKI TGRQNATSSV CNDDKENVSD LKIEVKAMGS DVMIRVESGK 420 RNHPGARLMN ALMDLELEVN HASISVMNDL MIQQATVKMG LRTYEQEQLR DMLKSKIN*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MNTDDNLSMI EALLTSDLWP PLPPANHYLS LETTLQKRLH AVLSGTHEPW TYAIFWKPSY  60
FDLSGESVLK WGDGVYNGDD EEKTGRRLRR TIKKTILSSP EEKERRSKVL RELNSMISGE  120
PFPVVEEEDA KDDIDDVVEV TDTEWFFLVS MTWTFGNGSG LPGKAFTTYN PVWVTGSDQI  180
YGSGCDRAKQ GGGLGLQTIV CIPSHNGVLE LGSTEHIRQN SDLFNKIRFL FSFEGSKDCS  240
GAPTSVQFPS SVHKYSNTNP NPVSQPIQIH FSGEERKRSS DDWMDETVIP EKKPGKKRGR  300
KPMHGREKPL NHVEAERMRR EKLNHRFYAL RAVVPNVSKM DKTSLLEDAV RYINELKSTA  360
ENAESEKNAV QNQLNELKKI TGRQNATSSV CNDDKENVSD LKIEVKAMGS DVMIRVESGK  420
RNHPGARLMN ALMDLELEVN HASISVMNDL MIQQATVKMG LRTYEQEQLR DMLKSKIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	3e-49	32	233	6	194	Transcription factor MYC3
4rqw_B	3e-49	32	233	6	194	Transcription factor MYC3
4rs9_A	3e-49	32	233	6	194	Transcription factor MYC3
4yz6_A	3e-49	32	233	6	194	Transcription factor MYC3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g081050.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010494874.1	0.0	PREDICTED: transcription factor bHLH28-like
Swissprot	Q9LUK7	0.0	BH028_ARATH; Transcription factor bHLH28
TrEMBL	R0G888	0.0	R0G888_9BRAS; Uncharacterized protein
STRING	XP_010494874.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	0.0	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]