PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g071310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 376aa MW: 40931.6 Da PI: 8.3771 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.9e-08 | 99 | 123 | 4 | 26 |
---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 4 elCrffartG..tCkyGdrCkFaHg 26 e C+ ++r G C++Gd+C FaHg Csa20g071310.1 99 EVCPEYSRQGggDCSRGDQCGFAHG 123 78**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0037 | 95 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 99 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-5 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.197 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5 | 133 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MDVGHINRPT VDILPRKLLS SAKSPSSVSS PLRDYKDQRD YSYDSDSEDP YAGDHFRMYE 60 FKIRRCTRSR SHDWTDCPFS HPGEKARRRD PRRFHYIGEV CPEYSRQGGG DCSRGDQCGF 120 AHGVFECWLH PSRYRTEACK DGKHCKRKVC FFAHSPRQLR ILLPSSPENY ISGGCGGSAS 180 SSPASVLSNK NNRCCLFCSH SPTSTLLGLS RSPSSSPPLS PADKAAAFSR LSRRRTAVLN 240 ELISSLDSFS LTEALAASSS SPVTMPVSTA AMIASANLSN HHQHRIPPWL DVGERDLQLQ 300 QGSPLQFALS PSSTPSYLHS QPSSSFFSDG LTPHGGRLSD LTAASAAAAE AKGKNSFEVG 360 SSGDLDLGWV NDLLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g071310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010494430.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 61-like | ||||
Swissprot | Q9FKW2 | 0.0 | C3H61_ARATH; Zinc finger CCCH domain-containing protein 61 | ||||
TrEMBL | D7MMK2 | 0.0 | D7MMK2_ARALL; Zinc finger (CCCH-type) family protein | ||||
STRING | XP_010494430.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44260.1 | 1e-152 | C3H family protein |