PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g067600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 239aa    MW: 27958.2 Da    PI: 9.8356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g067600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-0985134155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+r h   Er RR++ ++++  L +llP a     +K++K +i+ekAv+ I +Lq
  Csa20g067600.1  85 RCRRHMLKERTRREKQKQSYLALHSLLPYA-----TKNDKNTIVEKAVDEIVKLQ 134
                     6788999**********************9.....9*************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1179147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-882138No hitNo description
PROSITE profilePS5088812.33584133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-685134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-788150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001390139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDDFFLDTVC QEEDNLWDLI ADDISVYDDK SVSSVPNRSA FRPYVKGTEP LLMSSSKVNV  60
KKRMVNLLRK NWEEKRNAVA PEKERCRRHM LKERTRREKQ KQSYLALHSL LPYATKNDKN  120
TIVEKAVDEI VKLQRLKKEL ERKIKMIEAK SAKDGHNDMT ETKVRFSLQK PLSGLDSMVE  180
VLHCLKSMGT KLKTVHANFS PHEFSTTMNI ETQIRGEEVE KRVERRLQEN EWKFLFLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g067600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0653900.0AY065390.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.
GenBankAY0967180.0AY096718.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494343.11e-177PREDICTED: transcription factor bHLH92-like
SwissprotQ9FIX51e-132BH092_ARATH; Transcription factor bHLH92
TrEMBLD7MXG41e-141D7MXG4_ARALL; Basic helix-loop-helix family protein
STRINGXP_010494343.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-112bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]