PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g067010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 374aa MW: 42764.8 Da PI: 9.5852 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.6 | 2.5e-06 | 310 | 332 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+++F ++ + H+++H Csa20g067010.1 310 YTCPKCNEVFDTSQKFAAHMSLH 332 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.97E-5 | 307 | 336 | No hit | No description |
PROSITE profile | PS50157 | 9.993 | 310 | 337 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 310 | 332 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 312 | 332 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MFNIYGDDFV NHREMSSIEM NQNSKMVQSM FTTSDHDHMN RANLFASTPS FSSYQNSHLS 60 SSSFLFNMMR RNFDSAFGVE YFSTNILNSA KYEIERVNSV MDSNPNIWIP VSLPPDFLGN 120 HGKVLNPTPL NFVYPDHDHD GPHHYAAPPH HHAAPPHHNV AFPHQRKDLN PTPLRVVYPG 180 QDYASPYHSA APSHHYDAPP HHADFLPQQR KVLNPTPISV IYPYDYVAPP HHSAAAPHQS 240 AAPPHHSAAP HHSDVFSLSS KQNHVPQDRR SLKKILKPTK TFDSEEDKKS GDDKYDGRTH 300 SIPREKNGPY TCPKCNEVFD TSQKFAAHMS LHYKSETNKE RARRLRARNK RKYRKFMATL 360 RRPKQRMELV AVE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g067010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010445898.1 | 0.0 | PREDICTED: uncharacterized protein LOC104728641 | ||||
TrEMBL | R0GCH8 | 4e-97 | R0GCH8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010445898.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1924 | 19 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G15740.1 | 4e-25 | C2H2-like zinc finger protein |