PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g057380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 114aa    MW: 13141.5 Da    PI: 11.1199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g057380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.83.5e-095210754109
             NAM  54 eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kgelvglkktLvfy 109
                     e +ewy+F + ++ +  g+rk +  t +g+Wka gk  +v+sk k+e++g k++L f 
  Csa20g057380.1  52 EPNEWYYFLTLSQVS--GSRKVKvETCEGRWKALGKLSDVVSKdKREVIGKKRILSFS 107
                     4579*****998865..6787776899**************99677789******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-947113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MKKKRISRWL KITTRKSNKR LLGLGFILWT KKASAIVSGV IRLTHTETDF FEPNEWYYFL  60
TLSQVSGSRK VKVETCEGRW KALGKLSDVV SKDKREVIGK KRILSFSGWT MTE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g057380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454025.11e-40PREDICTED: NAC domain-containing protein 30-like
TrEMBLR0HBL02e-26R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010454025.15e-40(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.19e-18NAC domain containing protein 88