PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g056040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21025.9 Da    PI: 8.8538
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g056040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF252.3e-082665443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    e k +r v  skRr++++ KA  L  L +a++av + s++
  Csa20g056040.1 26 ETKQQRAVACSKRRQTVFSKAADLYHLSGANIAVFVTSPS 65
                    77999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.2081565IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-141574IPR002100Transcription factor, MADS-box
CDDcd002662.17E-191697No hitNo description
SuperFamilySSF554552.75E-151798IPR002100Transcription factor, MADS-box
PfamPF003192.5E-82668IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MPPSSASEST MKIKGTKRKI EIKKRETKQQ RAVACSKRRQ TVFSKAADLY HLSGANIAVF  60
VTSPSEISDV VYSFSGYSPA HEIADCYLNR KSPPKIEVKS QSKLGFWWED PDLYHSCDDI  120
SELNILDRIE RVKKHVMACL EKKEKLQSVS NTEQNPITCS LDEHCDRGEP HQSPHQRCQR  180
VKYV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g056040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495546.11e-123PREDICTED: uncharacterized protein LOC104772656
TrEMBLR0HBN41e-82R0HBN4_9BRAS; Uncharacterized protein
STRINGXP_010495546.11e-122(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.11e-72AGAMOUS-like 39