PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g049180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 334aa    MW: 36563.3 Da    PI: 5.5041
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g049180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18223257135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Csa20g049180.1 223 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 257
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.7E-791310IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.807217253IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-17217267IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-16219281No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14221255IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.71E-15222269No hitNo description
PfamPF003201.2E-15223257IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEDEAHEFFH AADHFAVDDL LVDFSNDDDE ENDVVADSTT TTTTAFTDSS NISAIDLPNF  60
SGDVQDGTSF SGDLCVPCDD LADELAWLSN IVDESFSPED VQKLQLISGF NTRPGPKSES  120
GTSENPNSTS PIFTTDVSVP AKARSKRSRA AACNWASRGL LMETVYDNPF TGESILSSHN  180
LSPPTSPPPP MAHLAKKQAT DGGYRRKKDV SSPESGGTEE RRCLHCATDK TPQWRTGPMG  240
PKTLCNACGV RYKSGRLVPE YRPAASPTFV LTKHSNSHRK VMELRRQKEM SKAHHEFIHH  300
HHGTGSAMIF DVSSEGDDYL IHHKVGPDFR QLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g049180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493840.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697810.0GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A178UTT90.0A0A178UTT9_ARATH; GATA transcription factor
STRINGXP_010493840.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-161GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]