PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g042750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 467aa    MW: 52498.6 Da    PI: 6.5944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g042750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.8e-5091371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+GfrF+Ptdeelv++yL+ k++g++ ++ +vi+e+di+k+ePwdLp  + vk++++ew fF++ d+ky++g+r nrat +gyWkatgkd++++
  Csa20g042750.1   9 LPVGFRFSPTDEELVKYYLRLKINGHDDDV-RVIREIDICKWEPWDLPdfSVVKTTDSEWLFFCPLDRKYPSGSRMNRATVAGYWKATGKDRKIK 102
                     79*************************999.99***************6447888999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s k++ +g+k+tLvfy+grapkg++t W+mheyr+
  Csa20g042750.1 103 SGKTKIIGVKRTLVFYTGRAPKGTRTCWIMHEYRA 137
                     *9999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-565160IPR003441NAC domain
PROSITE profilePS5100554.6159160IPR003441NAC domain
PfamPF023655.8E-2510136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDVLSLASLP VGFRFSPTDE ELVKYYLRLK INGHDDDVRV IREIDICKWE PWDLPDFSVV  60
KTTDSEWLFF CPLDRKYPSG SRMNRATVAG YWKATGKDRK IKSGKTKIIG VKRTLVFYTG  120
RAPKGTRTCW IMHEYRATEK DLDGTKSGQN PFVICKLFKK QDIVSGAAPE DSKSCEVEPA  180
VSSPTVVDEM KSEVEMSEVS LVCLKTEDTK PCDVAESSLL VSSECRSENS AAEATTTGLD  240
DIDWLSYLEF DSLNQKLFSP LHSQLQSEIG SSVNGYQSGS NELFKNHNGD HIQTQYGTND  300
ADEYMTKFLE SFNEIPYELP ERTELVEQKP EQIPHHEPHN ILRTCNQISD VSQTGIKIRT  360
RRAQDPGCAE KFVMQGDAPR RLRLQVNFDS HKSETDSTQL QCIKKEVKDT TRETLTKGCG  420
TFTRSKSKTS FIFKKIAAMG CSYKGLFRAG VVALVFVMSI CSLIIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-47216110166NO APICAL MERISTEM PROTEIN
1ut4_B2e-47216110166NO APICAL MERISTEM PROTEIN
1ut7_A2e-47216110166NO APICAL MERISTEM PROTEIN
1ut7_B2e-47216110166NO APICAL MERISTEM PROTEIN
3swm_A3e-47216113169NAC domain-containing protein 19
3swm_B3e-47216113169NAC domain-containing protein 19
3swm_C3e-47216113169NAC domain-containing protein 19
3swm_D3e-47216113169NAC domain-containing protein 19
3swp_A3e-47216113169NAC domain-containing protein 19
3swp_B3e-47216113169NAC domain-containing protein 19
3swp_C3e-47216113169NAC domain-containing protein 19
3swp_D3e-47216113169NAC domain-containing protein 19
4dul_A2e-47216110166NAC domain-containing protein 19
4dul_B2e-47216110166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g042750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493709.10.0PREDICTED: NAC domain-containing protein 91
SwissprotQ9LKG80.0NAC91_ARATH; NAC domain-containing protein 91
TrEMBLR0H6V50.0R0H6V5_9BRAS; Uncharacterized protein
STRINGXP_010493709.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.20.0TCV-interacting protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  3. Li Y, et al.
    The interaction between Turnip crinkle virus p38 and Cucumber mosaic virus 2b and its critical domains.
    Virus Res., 2016. 222: p. 94-105
    [PMID:27288723]