PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g038360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 423aa MW: 47601.9 Da PI: 6.5037 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.4 | 1.3e-16 | 162 | 208 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE.EE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly.ey 49 ++ s++++ ++ R ++++KKA+ELS+LCd+e +vi++ +g l ++ Csa20g038360.1 162 SSVSKKTTNLASREKTMFKKASELSILCDVELCVIYYNRDGDLVgTW 208 67789999*********************************974255 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-5 | 150 | 210 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.54 | 161 | 204 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.69E-18 | 165 | 236 | No hit | No description |
SuperFamily | SSF55455 | 1.06E-13 | 166 | 245 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-11 | 167 | 204 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MIKYAFRVCT SQLVRQLLRC LCNQPHYLVT ADDVDLYLAV EVQPLDDRNR KWLLVPLDPV 60 MQSNIEKTFH TGHASYNVSL ATGYLDIWQA ATLSIEREGY SIQCSSNCLT NCGKVLSFYY 120 IKQTKQRTTM VSSSSSSSSM LASSSSSMLS VRNRKCFKPS LSSVSKKTTN LASREKTMFK 180 KASELSILCD VELCVIYYNR DGDLVGTWPE DQSKVRDMAE RYSKLNDSER RKKSTNLSQF 240 LNKKTDKMTS LDINDKRFSE KLLEMEASLE SNLRVFQDNL LRVLQNQTEQ PDQNPLVSSA 300 GFFTTDPSLM SGGVSETEQN LSTPSLTQQH QSKVSLFLYN HDNGSFCQLP DSVSTFDPSM 360 SSASLGAQGS FLTSNNFDLP IPMVFPPLMQ TQTPPLVHFD DQFADWNQTP YFADPMMFSS 420 CV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g038360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495396.2 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL53 | ||||
Refseq | XP_010495400.2 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL53 | ||||
Swissprot | Q7X9N2 | 1e-90 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | R0H119 | 1e-115 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010495396.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010495400.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27070.1 | 5e-91 | AGAMOUS-like 53 |
Publications ? help Back to Top | |||
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