PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g037640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 370aa    MW: 41794 Da    PI: 8.1964
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g037640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07213235123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F+r  nL+ H+r H
  Csa20g037640.1 213 HYCQICGKGFKRDANLRMHMRAH 235
                     68*******************99 PP
2zf-C2H211.80.00073334349621
                     TTEEESSHHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHir 21 
                     Cg+ Fsrk+ L++H +
  Csa20g037640.1 334 CGTKFSRKDKLMSHVS 349
                     **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.92E-6211238No hitNo description
PROSITE profilePS5015712.632213240IPR007087Zinc finger, C2H2
SMARTSM003550.0028213235IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-6213237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
SMARTSM00355160264297IPR015880Zinc finger, C2H2-like
SMARTSM0035542302324IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTNQDEHITS KGEGSMSSFS GTTTSSSKHI YLNPVTAAGT KSLEEDDVSL SLLYNLSTLQ  60
DKVHQIQSLV SFYMISTNHI NQSSGSTSLA VANIGSLVQE IITAASSMLF ACQQLHIGFN  120
NDNDIHNDQT ADAMVLDFSR QETDPGRDFV QESTNLFGVQ ERGQISFPDH NHNWYGTETL  180
NPKKDHHHSS KPRLGNYEIL ELDVADLLAK YTHYCQICGK GFKRDANLRM HMRAHGDEYK  240
TREALISPTS HDKKEEYSLK KHYYSCPQQG CRWNQRHEKF QPLKSVICAK NHYKRSHCPK  300
MYMCRRCGVK HFSVLSDLRT HEKHCGDIKW VCSCGTKFSR KDKLMSHVSL FLGHVPAHGS  360
SQPPTITLK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g037640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052430.0AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17.
GenBankAK2277400.0AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493384.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLD7M1K60.0D7M1K6_ARALL; Zinc finger family protein
STRINGXP_010493384.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.10.0C2H2 family protein