PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g035850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 341aa    MW: 38310.4 Da    PI: 4.9876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g035850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.5e-49221472128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGf+F+Ptd el+++yLk+k++g + ++ evi++++iy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s 
  Csa20g035850.1  22 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPDAEIYNFEPWDLPdKSIVKSDNEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS- 114
                     69************************999.99***************778888999**************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++e++g+k+tLvf+ grapkge+tdW+mhey +
  Csa20g035850.1 115 GSEVIGTKRTLVFHIGRAPKGERTDWIMHEYCM 147
                     9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-5410163IPR003441NAC domain
PROSITE profilePS5100551.78921164IPR003441NAC domain
PfamPF023657.8E-2523146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
METEAFGMSK ATAASVEAST VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPDAEIYN  60
FEPWDLPDKS IVKSDNEWFF FCARGKKYPH GSQNRRATKM GYWKATGKER DVKSGSEVIG  120
TKRTLVFHIG RAPKGERTDW IMHEYCMKGV SLDDAMVVCR VRRNKENHSG TSQKTPQPNL  180
VAENHMPLQN GAISSESPSD WDNLVDFYLA GESGDKLLAE MAESSENLQM HNEEDFFADI  240
LRDEIINLDE AVKTGNTSNE VPTLESASME IRVLPLPNMI DKQMSSLLEE RPSQKKKGQD  300
ATESLSSCFV GLYSIKSVNR ARWDVIICAV ALVAMLFYLE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4071672170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g035850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3856850.0AF385685.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
GenBankAY0780060.0AY078006.1 Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493302.10.0PREDICTED: NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLR0HBJ40.0R0HBJ4_9BRAS; Uncharacterized protein
STRINGXP_010493302.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]