PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g031760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 417aa    MW: 47918.2 Da    PI: 6.963
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g031760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.31.9e-29451742128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     ppG+ ++P+d e++   L +k +       l l++  i+ v+iy+++P++L     ka++++w f skr+k  + gkr++r +k gyW+at   k
  Csa20g031760.1  45 PPGVNYRPKDLEVI-SLLGRKQDYLGgnrdL-LATLsIHLVNIYESNPEELSvDFKKANDTDWIFISKRNKMGKDGKRQKRDAKGGYWHATVACK 137
                     9*************.7787775443333332.22335**************9434455788********************************** PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ + ++ lvg k+ L +y g++p+g+kt+W+mhey +
  Csa20g031760.1 138 KIDA-GQGLVGYKTALDYYVGKRPNGKKTSWLMHEYWI 174
                     **99.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-3339194IPR003441NAC domain
PROSITE profilePS5100535.09844195IPR003441NAC domain
PfamPF023658.7E-1345172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSMPGRNKRK ERSLPEPEPE PSEIPSSSAD DHHLSSSPST RPCFPPGVNY RPKDLEVISL  60
LGRKQDYLGG NRDLLATLSI HLVNIYESNP EELSVDFKKA NDTDWIFISK RNKMGKDGKR  120
QKRDAKGGYW HATVACKKID AGQGLVGYKT ALDYYVGKRP NGKKTSWLMH EYWIDQCPSA  180
DDDVKDYSMC KIYRSTQAIN KQKKAEEEEK KKQKKVVQQQ PPSVEYHQPH APLDSYQPQP  240
HHDIAYQQQH LFQPAPLDSY QPQPRDLAYQ QQQQQQFWPG PLASYRTHQR QFWAARPDSH  300
QLQPHYDSAY QQFIRMLEGD KQQQQPSLAP APSPQGQDSR SGMVMTQEDG FFNPINELLN  360
YEEGHGVVTE QKQQEQSAPI LPPPPPQGHQ LQPYYDFAYV QHQFLMTTTT LEEENX*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-17362019171NO APICAL MERISTEM PROTEIN
1ut4_B5e-17362019171NO APICAL MERISTEM PROTEIN
1ut7_A5e-17362019171NO APICAL MERISTEM PROTEIN
1ut7_B5e-17362019171NO APICAL MERISTEM PROTEIN
3swm_A6e-173620112174NAC domain-containing protein 19
3swm_B6e-173620112174NAC domain-containing protein 19
3swm_C6e-173620112174NAC domain-containing protein 19
3swm_D6e-173620112174NAC domain-containing protein 19
3swp_A6e-173620112174NAC domain-containing protein 19
3swp_B6e-173620112174NAC domain-containing protein 19
3swp_C6e-173620112174NAC domain-containing protein 19
3swp_D6e-173620112174NAC domain-containing protein 19
4dul_A5e-17362019171NAC domain-containing protein 19
4dul_B5e-17362019171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g031760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495312.20.0PREDICTED: NAC transcription factor 29-like
TrEMBLR0H2594e-85R0H259_9BRAS; Uncharacterized protein
STRINGXP_010495312.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.11e-61NAC domain containing protein 63