PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g031750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 333aa    MW: 38547.3 Da    PI: 5.2876
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g031750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.41.2e-22591672128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     ppG++F Ptd+el+ +yL++ ++++k++   ++ i++v+iy+++P++L +++++ +ekew+f s r k++                     k++ 
  Csa20g031750.1  59 PPGYQFVPTDQELILHYLEPFLQNNKNSWlLSApIHHVNIYESNPQQLSEEFEKgNEKEWFFISVRTKQA--------------------AKKIN 133
                     9**********************99954423345**************9766652556887777765532....................34677 PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++  vg kk+L +y g++p+g+kt W+mhey+ 
  Csa20g031750.1 134 A-GKGIVGYKKVLEYYVGERPNGVKTCWLMHEYSS 167
                     7.7789***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-3647187IPR003441NAC domain
PROSITE profilePS5100521.84758187IPR003441NAC domain
PfamPF023652.8E-1459166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAIPPKNKCK VRSSPERQTQ PPEWQTQPPP PKQNRDNPSS SSSIVDNFSS PSTKPFIFPP  60
GYQFVPTDQE LILHYLEPFL QNNKNSWLLS APIHHVNIYE SNPQQLSEEF EKGNEKEWFF  120
ISVRTKQAAK KINAGKGIVG YKKVLEYYVG ERPNGVKTCW LMHEYSSESS SVDNEKVDHA  180
LCKIYLTPKG AKKKKADQEE ENEKLKKEEE AVEHLDLHQP DQSQPHDMVY QQPQYCLLDM  240
IDAWLKNVEE QQGVSVDTQQ QQQEQCTPIL PHDMVYQQPQ YCLLPAEQQK PQTQPSPYNF  300
PELISFEQEP VIPEGFEHFF ADFIKPTFTE RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-145819320174NAC domain-containing protein 19
3swm_B4e-145819320174NAC domain-containing protein 19
3swm_C4e-145819320174NAC domain-containing protein 19
3swm_D4e-145819320174NAC domain-containing protein 19
3swp_A4e-145819320174NAC domain-containing protein 19
3swp_B4e-145819320174NAC domain-containing protein 19
3swp_C4e-145819320174NAC domain-containing protein 19
3swp_D4e-145819320174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g031750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431407.11e-163PREDICTED: NAC transcription factor 29-like
TrEMBLA0A384KMI22e-78A0A384KMI2_ARATH; NAC064
TrEMBLQ9LXY72e-78Q9LXY7_ARATH; NAC domain containing protein 64
STRINGXP_010431407.11e-162(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.12e-65NAC domain containing protein 64