PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g027270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 259aa MW: 29862.6 Da PI: 11.261 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 28 | 5e-09 | 17 | 58 | 17 | 59 |
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + g+ D C+ f++ geegt++a+ C CgCH FH + v++ Csa20g027270.1 17 INGEPKDHCRHFVAG-GEEGTPEAFLCGGCGCHVCFHWKYVKK 58 667888********8.999******************998765 PP | |||||||
2 | ZF-HD_dimer | 36.7 | 9.6e-12 | 67 | 98 | 4 | 35 |
ZF-HD_dimer 4 vrYkeClkNhAaslGgh.avDGCgEfmpsegee 35 v+Y +ClkNh a++Gg ++DGCgEfm++ g e Csa20g027270.1 67 VKYGKCLKNHMAHMGGRcSLDGCGEFMAA-GVE 98 89**************7369********9.444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-4 | 17 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.3E-7 | 18 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.0E-9 | 67 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 0.001 | 67 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 11.304 | 69 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSKWREIVTY GMCVNRINGE PKDHCRHFVA GGEEGTPEAF LCGGCGCHVC FHWKYVKKEI 60 DMSTAIVKYG KCLKNHMAHM GGRCSLDGCG EFMAAGVEAR SLSRSYSPRP RHRSPPRDRK 120 TTYDDNRHRE RLSSRDHESS DPSGLLIRNL PLDASGRHGD YKRTSHRSPR RRYRSHSRSR 180 SPPRRDSRHS KGREDDLYSP QRSRSISRSP LPRKEKKDKS YNVSQSPRRN RRSRGEERVL 240 TPIRSRSLSR SRSRSLSR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g027270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ293797 | 1e-63 | AJ293797.1 Arabidopsis thaliana mRNA for SC35-like splicing factor SCL28, 28 kD. | |||
GenBank | DQ446966 | 1e-63 | DQ446966.1 Arabidopsis thaliana clone pENTR221-At5g18810 28 kDa SC35-like splicing factor (At5g18810) mRNA, complete cds. | |||
GenBank | DQ653294 | 1e-63 | DQ653294.1 Arabidopsis thaliana clone 0000019121_0000013167 unknown mRNA. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17489 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 5e-08 | mini zinc finger 1 |