PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa20g026680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 147aa MW: 17144.6 Da PI: 9.4743 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32 | 3.6e-10 | 21 | 103 | 34 | 127 |
NAM 34 ikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvm 123 +++ + y +Pw+L+++ ++ + +ew++F+kr++k + Wk tg k v + +g+++g k+ L fy +++p+ W+m Csa20g026680.1 21 FNKENSYAEKPWQLNHTKNNifKPNEWFYFVKRNRKVK------------GWKDTGGLKYVNVVsrkTGRVIGKKRNLSFYVKSKPS----GWTM 99 667789999*****84322245778******9877642............3*****988776654457888**********777777....6*** PP NAM 124 heyr 127 ey+ Csa20g026680.1 100 TEYS 103 ***7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 8.3E-8 | 12 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-14 | 24 | 106 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 147 aa Download sequence Send to blast |
MAMVEECYAD DEEDELVGFG FNKENSYAEK PWQLNHTKNN IFKPNEWFYF VKRNRKVKGW 60 KDTGGLKYVN VVSRKTGRVI GKKRNLSFYV KSKPSGWTMT EYSSFIYEQI LPKPSSLPPP 120 QRTMIILLGE SQRMIMEDDS FASLYF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa20g026680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019097373.1 | 1e-89 | PREDICTED: NAC domain-containing protein 35-like | ||||
TrEMBL | Q9FK42 | 1e-31 | Q9FK42_ARATH; At5g18300 | ||||
STRING | XP_010454060.1 | 2e-60 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18300.1 | 2e-36 | NAC domain containing protein 88 |