PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 218aa    MW: 24704.6 Da    PI: 6.3917
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.21e-12128102129
             NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                     +kktLvfy+grap+gekt+Wvmheyrle
  Csa20g026650.1   1 MKKTLVFYRGRAPRGEKTNWVMHEYRLE 28 
                     8*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.981152IPR003441NAC domain
SuperFamilySSF1019415.23E-17153IPR003441NAC domain
PfamPF023653.9E-5127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKKTLVFYRG RAPRGEKTNW VMHEYRLEGK YSYHNLPKSA RDEWVVCRVF HKNNPSTTTQ  60
PMTRIPIENL TRTDSLENID HLLDFSSLPP LIDPSFTSQT EQPNFKPINP PTYNISSPIQ  120
PHHFNSYQSM FNHQDFGSAS ASGSTYNNNN DMIKVEQSLV SVSQETCLSS DVNVTTTATT  180
EVSSGPVMKQ EMGMMGMVNG SKSYEDLCDL RGFLWDY*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026650.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2283690.0AK228369.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-80-C22.
GenBankBT0057130.0BT005713.1 Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds.
GenBankBT0060700.0BT006070.1 Arabidopsis thaliana clone U20123 putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019097274.11e-164PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FK441e-147NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A178UET31e-144A0A178UET3_ARATH; ANAC087
TrEMBLF4JWK61e-144F4JWK6_ARATH; NAC domain containing protein 87
STRINGXP_010495276.11e-162(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-149Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]