PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g026400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 158aa MW: 18544.9 Da PI: 9.0526 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.2 | 2.6e-26 | 16 | 138 | 3 | 126 |
NAM 3 pGfrFhPtdeelvveyL.kkkvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 +GfrFhPt++el+ + L ++kv+++++++ e +++d+y ePw+L ++ + e ++wy+F++r k+ rk r t +g+Wka gk + Csa20g026400.1 16 VGFRFHPTEQELIRYCLgRNKVAKTSNKVLELEDKTDLYAKEPWRLThTE--TdffEPNQWYYFVTRTGKS----RKVRgETCEGRWKALGKLSN 104 7************99994457888889998888888**********8322..2245778*******98875....77777999*********999 PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmhey 126 v+s+ k+e++g k+++ fy + +++++ W+m ey Csa20g026400.1 105 VVSEdKREVIGNKRSFSFY--VKGESTSSGWTMTEY 138 999867788**********..34444689******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-29 | 13 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.993 | 14 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-17 | 16 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MSMVEKYNEK EQQEFVGFRF HPTEQELIRY CLGRNKVAKT SNKVLELEDK TDLYAKEPWR 60 LTHTETDFFE PNQWYYFVTR TGKSRKVRGE TCEGRWKALG KLSNVVSEDK REVIGNKRSF 120 SFYVKGESTS SGWTMTEYYP LDGGSFQNQV LCHLKRP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g026400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010492801.1 | 1e-115 | PREDICTED: NAC domain-containing protein 30-like | ||||
TrEMBL | R0HBL0 | 1e-76 | R0HBL0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010492801.1 | 1e-114 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14744 | 8 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 2e-42 | NAC domain containing protein 88 |