PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 160aa    MW: 18699.2 Da    PI: 9.2852
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.64e-26161413127
             NAM   3 pGfrFhPtdeelvveyLkk.kvegkkleleevikevdiykvePwdLp.kkvka..eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkev 92 
                     +GfrFhPt++e +++ L++ kv+++++++ e  +++d+y  ePw+L  +++    + +ewy+F++ ++ +  g+rk +  t +g Wka gk  +v
  Csa20g026350.1  16 VGFRFHPTEQERISYCLRRnKVAKTSNKVLELEDKTDLYAKEPWRLShRET-DffKPNEWYYFVTLAQVS--GNRKVKgETCEGHWKALGKLSDV 107
                     7************99998625777778888878888**********83332.235778*******98875..55666668999************ PP

             NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                     +sk k+e++g k++L fy + ++  +++ W+m ey 
  Csa20g026350.1 108 VSKdKREVIGKKRILSFYVKGEN--NSSGWTMTEYY 141
                     *9967788**********44443..489******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-2713156IPR003441NAC domain
PROSITE profilePS5100529.94914159IPR003441NAC domain
PfamPF023652.4E-1516140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSMVEKYNEK EQQEFVGFRF HPTEQERISY CLRRNKVAKT SNKVLELEDK TDLYAKEPWR  60
LSHRETDFFK PNEWYYFVTL AQVSGNRKVK GETCEGHWKA LGKLSDVVSK DKREVIGKKR  120
ILSFYVKGEN NSSGWTMTEY YTLDGGSFQT HVLCHLKGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492797.11e-117PREDICTED: NAC domain-containing protein 30-like
TrEMBLR0HBL01e-75R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010492797.11e-116(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-41NAC domain containing protein 88