PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 158aa    MW: 18470.9 Da    PI: 8.7705
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.11.1e-25161393127
             NAM   3 pGfrFhPtdeelvveyL.kkkvegkkleleevikevdiykvePwdLp.kkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +GfrFhPt++el+ + L ++kv+++++++ e  +++d+y  ePw+L  +++ +  e++ewy+F++r  k++   + +  t +g+Wka gk  +v+
  Csa20g026310.1  16 VGFRFHPTEQELIRYCLgRNKVAKTSNKVLELEDKTDLYAKEPWRLThTET-EffETNEWYYFVTRTGKSR---KVKGETCEGRWKALGKLSNVV 106
                     7************99994457888889998888888**********83333.245778*******988753...34448999********99999 PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                     s+ k+e++g k+++ fy + ++  + + W+m e+ 
  Csa20g026310.1 107 SEdKREVIGKKRSFSFYVKGES--NPSGWTMTEFY 139
                     9867788**********44443..479******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-2813154IPR003441NAC domain
PROSITE profilePS5100530.07514157IPR003441NAC domain
PfamPF023651.2E-1516138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSMVEKYNEK EQQEFVGFRF HPTEQELIRY CLGRNKVAKT SNKVLELEDK TDLYAKEPWR  60
LTHTETEFFE TNEWYYFVTR TGKSRKVKGE TCEGRWKALG KLSNVVSEDK REVIGKKRSF  120
SFYVKGESNP SGWTMTEFYT LDGGSFQNHV LCHLKGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495268.11e-114PREDICTED: NAC domain-containing protein 30-like
TrEMBLR0HBL09e-76R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010495268.11e-113(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.13e-34NAC domain containing protein 88