PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa20g025340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 500aa MW: 57438.9 Da PI: 5.1682 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.5 | 1.8e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v Csa20g025340.1 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 79****************************.99***************6345667999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++g+kktLv+y+grap+g +t Wvmheyrl Csa20g025340.1 100 C-RDHAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 *.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-63 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.061 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 500 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSC RDHAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIVI EAKPRDQHHQ QQQHQPYVHT 180 GSNLSGNSSF DVCSDLEISS NTHQGLPYSN STDTQPRFGN ANSIGVHDDW SQFLSQDMPS 240 SFSGYGPYIT QSKVNTALEC EMLQHQMSLP PLRVENSQVQ AIDFSNRLMN QNSGQSGFDD 300 FTFAPSNSSQ FYNNNNVDDH LRNIGNLDEQ LLDAGNSTWM RMSNENLNQS FIEEEEILPS 360 FERNDQDLEC YGGSRTNTIN NIDIDDFFSF ENDDNSNTTL NSSGVELIEE EETIVDHKML 420 ISTPQTTEIL YYQVVPSQIL KIHISPRVQR SEERAAVVLL MEEDKKDSWF QKAENVAKMR 480 LKQISLVAKR YYKSFTIIF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-54 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-54 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-54 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-54 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-54 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-54 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-54 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-54 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-54 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa20g025340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010492671.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
Swissprot | Q9FFI5 | 0.0 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | R0FKW5 | 0.0 | R0FKW5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010492671.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4411 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17260.1 | 0.0 | NAC domain containing protein 86 |
Publications ? help Back to Top | |||
---|---|---|---|
|