PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g023680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 320aa    MW: 37424.8 Da    PI: 5.7925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g023680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.5e-101913011128
             NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                     de ++ + Lk+ + + +  ++ + +++d+++ +P+     +  +  e+  f + + ++++ gk      +sg W+  g+dk ++s+ +g+  g k
  Csa20g023680.1  19 DEVIILRLLKRMIVNGDSWAKLFTQDADVFNKNPNVE---F--N-AEIpIFVVVKPRTESCGKTDG--CSSGCWRIIGRDKLMKSEeTGKILGFK 105
                     7778888888888888866655688889999999632...2..2.344266666666666654444..469**********99998678889*** PP

             NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                     k+L f   ++p   k +Wvm+eyrl
  Csa20g023680.1 106 KILKFCLTTQPLEYKRSWVMEEYRL 130
                     ***********************98 PP
2NAM27.58.8e-0920630136128
             NAM  36 evdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgelvglkktLvfy.......kgrapkgektdWv 122
                     + ++y+++P +L         e  f       ya+   r++    +gyWk   +d+ ++sk+g+++g kk + fy        g + +  k +W+
  Csa20g023680.1 206 TNNVYRLHPLKLVD-----PYEKMFRLYGTCIYANeTLRTTDECYRGYWKILHSDELIKSKSGNTIGFKKGFEFYhmekvlsYGYEGEDLKVTWT 295
                     45789999999952.....222333333333343313355556679*****************************766555547778888***** PP

             NAM 123 mheyrl 128
                     ++eyrl
  Csa20g023680.1 296 IKEYRL 301
                     ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.2979148IPR003441NAC domain
PfamPF023654.8E-718130IPR003441NAC domain
SuperFamilySSF1019413.01E-2218147IPR003441NAC domain
SuperFamilySSF1019411.57E-22168316IPR003441NAC domain
PROSITE profilePS5100517.598172317IPR003441NAC domain
PfamPF023651.1E-4237301IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEDESAPDYN QMAMLNAEDE VIILRLLKRM IVNGDSWAKL FTQDADVFNK NPNVEFNAEI  60
PIFVVVKPRT ESCGKTDGCS SGCWRIIGRD KLMKSEETGK ILGFKKILKF CLTTQPLEYK  120
RSWVMEEYRL TNNLNRKQDH VICKIRFLFR TEISFLLAKH FSYLSTIPEN LVLPSYGYYS  180
DTQEEDESYL LAISDSDGNV WPSYVTNNVY RLHPLKLVDP YEKMFRLYGT CIYANETLRT  240
TDECYRGYWK ILHSDELIKS KSGNTIGFKK GFEFYHMEKV LSYGYEGEDL KVTWTIKEYR  300
LNEEEKQNKV LCVIKLTEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g023680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492480.10.0PREDICTED: uncharacterized protein LOC104769861
TrEMBLR0ETF21e-151R0ETF2_9BRAS; Uncharacterized protein
STRINGXP_010492480.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-154NAC family protein