PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g020610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 293aa    MW: 33225.9 Da    PI: 9.5075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g020610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001125147223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  Hi+  H
  Csa20g020610.1 125 SCSVCSRVYPTSRLLSIHISEaH 147
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.3997122IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099122IPR007087Zinc finger, C2H2
SMARTSM003555124147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126147IPR007087Zinc finger, C2H2
SMARTSM003550.017162187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MFVRRRRKRI LFEFCCSALL CHSCGGEAMA MGMAVDTVGE LAFPVWNPIR RRFPPDSPFF  60
ASGNVERELL AKQVALDLTE DEINHLQIIV ETESRRISCP IAGCRERLKS LDHFEDHYNA  120
RHTASCSVCS RVYPTSRLLS IHISEAHDSF FQAKVARGYD MYECLVEGCG LKFKTYKARR  180
RHLVDKHKFP TTFEFFKKTQ LSKKRRDKLQ RQHVSKLKHK EDKEEASSDA MEVEDKASGD  240
GLVSALSTLT TADTTPSNVS FGRRHGRGLT FVPRSVHREK RTESSSAPGP TN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207KKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g020610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2283560.0AK228356.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-77-M10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492214.10.0PREDICTED: zinc finger protein 511-like
TrEMBLA0A178UDE41e-179A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF41e-179Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
STRINGXP_010492214.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-162zinc ion binding;nucleic acid binding;zinc ion binding