PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g020460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 234aa MW: 26663.7 Da PI: 9.9348 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.7 | 7e-34 | 42 | 167 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp G+rFhPt++el+ +yL +k+ +++l+ ++i+ +d+++++P ++p +++ek+ yfF+k+++ +++++r + +gyWk gk++++++ Csa20g020460.1 42 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFYSHPLTFPG--DQKEKQRYFFCKKKEVSSNEHRIKILSGDGYWKPIGKERPIIA- 132 699*************************99.88***************4..4578899************************************. PP NAM 96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 g++vg+++tL+fy ++++++ +kt+W m ey l Csa20g020460.1 133 CGRAVGIRRTLAFYetNKSSSDCNKTRWSMTEYCL 167 999***********4334566678*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-40 | 36 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.133 | 42 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-19 | 43 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLIIKVLILI HSLRTNLKKE RKGRREDMEV EKRIVVNGGM RLPIGYRFHP TEQELILHYL 60 LPKAFASPLP SSIIPVFDLF YSHPLTFPGD QKEKQRYFFC KKKEVSSNEH RIKILSGDGY 120 WKPIGKERPI IACGRAVGIR RTLAFYETNK SSSDCNKTRW SMTEYCLAGF ASAKVFGEWA 180 VYNVYERKGT KARKQRKSRD IGDEDLSCSI HFTVGSDHET GPPPPSPPTS ADE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-20 | 24 | 167 | 5 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g020460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084216 | 0.0 | AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010492188.1 | 1e-174 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | D7M5Z0 | 1e-133 | D7M5Z0_ARALL; ANAC084 | ||||
TrEMBL | R0FGA4 | 1e-132 | R0FGA4_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010492188.1 | 1e-174 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7874 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 1e-135 | NAC domain containing protein 84 |