PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g018530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 261aa    MW: 29542 Da    PI: 9.5258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g018530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkkv++++l++ ++i+e+d+++++PwdLp +    +ke yfFs+r+ ky++g+r+nrat sgyWkatg dk+v+++
  Csa20g018530.1  14 LPPGFRFHPTDEELVVQYLKKKVSSSPLPA-SIIPEFDVCRADPWDLPGN---LDKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTS 104
                     79****************************.89***************44...5789********************************999988 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vglkktLvfykg+ p+g++tdW+mheyrl
  Csa20g018530.1 105 rGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                     57777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-6010160IPR003441NAC domain
PROSITE profilePS5100558.64814160IPR003441NAC domain
PfamPF023652.3E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDNVKLVKNG VLRLPPGFRF HPTDEELVVQ YLKKKVSSSP LPASIIPEFD VCRADPWDLP  60
GNLDKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK  120
GKPPHGSRTD WIMHEYRLSS SPPSCMGPTQ NWVLCRIFLK KRAGNKNDDD DGDSRTLRYN  180
NNNNNNTNDQ IDIITRTEQT DDKTKPIFFD FMRKERTTDL NLMPSSPSSD HASSGVTTEI  240
FSSSSSDEET SSCNSFRRNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511216615171NO APICAL MERISTEM PROTEIN
1ut4_B2e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_A2e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_B2e-511216615171NO APICAL MERISTEM PROTEIN
3swm_A3e-511216618174NAC domain-containing protein 19
3swm_B3e-511216618174NAC domain-containing protein 19
3swm_C3e-511216618174NAC domain-containing protein 19
3swm_D3e-511216618174NAC domain-containing protein 19
3swp_A3e-511216618174NAC domain-containing protein 19
3swp_B3e-511216618174NAC domain-containing protein 19
3swp_C3e-511216618174NAC domain-containing protein 19
3swp_D3e-511216618174NAC domain-containing protein 19
4dul_A2e-511216615171NAC domain-containing protein 19
4dul_B2e-511216615171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g018530.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3857340.0AF385734.1 Arabidopsis thaliana AT5g13180/T19L5_140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492064.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-152NAC83_ARATH; NAC domain-containing protein 83
TrEMBLR0HAM41e-164R0HAM4_9BRAS; Uncharacterized protein
STRINGXP_010492064.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-139NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]