PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g018150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 709aa MW: 77998.5 Da PI: 7.2342 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.3e-06 | 301 | 321 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G Ck Gd C +aHg Csa20g018150.1 301 PCPDFKK-GSCKQGDMCEYAHG 321 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.4E-17 | 39 | 183 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.04E-16 | 41 | 166 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.12 | 82 | 112 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.653 | 82 | 175 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.5E-10 | 82 | 151 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.53E-14 | 84 | 160 | No hit | No description |
SMART | SM00248 | 7.3E-5 | 117 | 149 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.942 | 117 | 152 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.2E-4 | 296 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-4 | 301 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.915 | 301 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.493 | 331 | 355 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 82 | 331 | 354 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MCGLAKKLDT EKTLTSLSDQ ETESLAKPMN DAEWEHSFSA LLEFAADNDV EGFKRQLSVV 60 SCINQMGLWY RRQRFVRRMV VEQRTPLMVA SLYGSLDVVK LILSFPEAEL NLSCGPDKST 120 ALHCAASGAS VSSLDVVKLL LNAGADPNIT DAHGNRPVDV LVVSPHAPGL RTILEEILKK 180 DEIISEDLHA SSSSLGSSFR SLSSSPDNGS SLLSLDSVSS PTKPNGTDGT FASEKKEYPI 240 DPSLPDIKSG IYSTDEFRMF SFKIRPCSRA YSHDWTECPF AHPGENARRR DPRKFHYTCV 300 PCPDFKKGSC KQGDMCEYAH GVFECWLHPA QYRTRLCKDG IGCNRRVCFF AHANEELRPL 360 YPSTGSGLPS PRSSSTVSAS TMDMASVLNM LPGSPSAAQH SFTPPISPSG NGGMPHSSMG 420 WSQQNIPALN LPGSNIQLSR LRSSLNARDI PSEQLSMLHE FEMQRQLSGD MHSPRFMNHS 480 ARPKTLTPSN LEELFSAEVA SPRFSDQLNV SSVLSPSHKS ALLNQLQNNK QSMLSPIKTN 540 LMSSPKNVEQ QHSLLHQASS PRAGEPISPM NARMKQQLHS RSLSSREFGS SLPRDLMPTD 600 SGSPLSPWSN WDQNHGSKVD WSVQSDELGR LRKSHSLANN PNREADVSWA QQMLRDSASS 660 SPRNGNRVVN MNGARPMTQG GSSVNPHHSD TRESDILESW LEQLQLDR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g018150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227145 | 0.0 | AK227145.1 Arabidopsis thaliana mRNA for zinc finger transcription factor -like protein, complete cds, clone: RAFL09-83-N23. | |||
GenBank | AL353013 | 0.0 | AL353013.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project). | |||
GenBank | AY099761 | 0.0 | AY099761.1 Arabidopsis thaliana zinc finger transcription factor-like protein (At5g12850) mRNA, complete cds. | |||
GenBank | AY128891 | 0.0 | AY128891.1 Arabidopsis thaliana zinc finger transcription factor-like protein (At5g12850) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010492018.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Refseq | XP_010492019.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56-like | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | R0H3J5 | 0.0 | R0H3J5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010492018.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |