PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g015900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 308aa    MW: 34441 Da    PI: 4.9453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g015900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.2e-11145188654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ErrR +r+N++++ Lr+++Pk      +K++  +iL  A++Y+k+L
  Csa20g015900.1 145 LMAERRRGKRLNDRLSMLRSIVPKI-----TKMDRTSILGDAIDYMKEL 188
                     589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.538139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14142204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8145188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-9146188No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MELTQLNKQE SNNLDDVKGG FIAMDQFVPN DWNFDYLCFN SSLEETDNID HLSSSSMNIV  60
SQPPTLLHQP PPQPLSPPPS PPFDYRFLED MIDSSCYPPP LILPTSQDNN NYAPLIVESN  120
SFVSTGVITK KKSNRKLEGQ PSKNLMAERR RGKRLNDRLS MLRSIVPKIT KMDRTSILGD  180
AIDYMKELLD KINKLQGDEQ ELGSNSHLNN LITKKSTVRN SLKFEVDQRE ADTHINICCS  240
TKPGLLLSTV STLETLGLEI QQCVISCFSD FSLQASCSEV AEQRDFVTSE DTKQALIRNA  300
GYGGKFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154ERRRGKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g015900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019097657.10.0PREDICTED: transcription factor bHLH61-like isoform X2
SwissprotQ9LXA91e-159BH061_ARATH; Transcription factor bHLH61
TrEMBLR0FFW21e-163R0FFW2_9BRAS; Uncharacterized protein
STRINGXP_010495136.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-145bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]