PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g009180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 333aa MW: 36956.5 Da PI: 8.5237 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.9 | 7e-11 | 166 | 194 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le Csa20g009180.1 166 KTLRRLAQNREAARKSRLRKKAYVQQLES 194 7789***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-9 | 157 | 210 | No hit | No description |
SMART | SM00338 | 4.2E-8 | 162 | 226 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.737 | 164 | 208 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 8.29E-25 | 166 | 218 | No hit | No description |
Pfam | PF00170 | 6.2E-8 | 166 | 196 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.39E-8 | 166 | 207 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 169 | 184 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.9E-30 | 258 | 330 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MQGHHQNHHH QQHLSSASAT SSASHGNFMN KDGYDIGEID PSLFLYLDGQ GHHDPSSTAP 60 SPLSHHHHTT QNLAMRPPTS TLNIFPSQPM HIEPPPSSTP NTDNARLVPA AQPSGSLRPS 120 SEPSMDLTNH SHFQPPLASN KSIKKEGNRK GPASSDHDIP KSSDPKTLRR LAQNREAARK 180 SRLRKKAYVQ QLESCRIKLT QLEQEIQRAR SQGVFFGGSL IGDQHQGGLP IGPGNVSSEA 240 AVFDMEYARW LEEQQRLLTE LRVATQEHLA ENELRMFVDA CLAHYDHLIN LKAMVAKTDV 300 FHLISGAWKT PAERCFLWMG GFRPSEIIKV RT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g009180.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ132742 | 0.0 | HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010491266.1 | 0.0 | PREDICTED: transcription factor TGA2.2-like isoform X2 | ||||
Swissprot | E3VNM4 | 0.0 | TGA10_ARATH; Transcription factor TGA10 | ||||
TrEMBL | A0A1J3I3I6 | 0.0 | A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1) | ||||
STRING | XP_010491265.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7207 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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