PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g005610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 658aa MW: 73672.3 Da PI: 4.154 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.3 | 3e-53 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs dkky++g+++nrat++gyWk+tgkd+e+ Csa20g005610.1 10 LAPGFRFHPTDEELVRYYLKRKVCNKPFKF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIR 103 579**************************9.99**************95347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl Csa20g005610.1 104 N-GSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 137 9.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-61 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.576 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-28 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MGRDSVTTSL APGFRFHPTD EELVRYYLKR KVCNKPFKFD AISVTDIYKS EPWDLPDKSK 60 LKSRDLEWYF FSMLDKKYSN GSKTNRATEK GYWKTTGKDR EIRNGSRVVG MKKTLVYHKG 120 RAPRGERTNW VMHEYRLSDE DLKRAGVPQE AYVLCRIFQK SGTGPKNGEQ YGAPFLEEEW 180 EEDAMTYVPD QDAFSEGLAV DDDVYVDIDE IDEKPENLVI YDAVPILPNY CHGESSNNVE 240 SGNHSDSGNY IQPGNYVVDS GGYFEQPIET FEEDKKPIIR DGSIQPCSLF PEEHIDCGVQ 300 DENAVNLDSS NNNVFVAADT CYSDVPIDTN YLPDEPFMDP NNSLPLNDGN YVVDSGGYFE 360 QPIETFEEDK KPIIRDGSIQ PCSLFPEEHI DCGVQDENAV NLDSSNNNVF VAADTCYSDV 420 PIDTNYLPDE PFMDPNNSLP LNDGLYLETN DLSIAQQDDF NFEDYLNDFN FDEDGFTLDD 480 PELDALLDQK PAPEELEKEV AEGKEMVEKK DSGEGSSSKQ DADLTDFDSA SKYPFLKKTS 540 HMLGSIPAPS SFASQFKSKD AAIRLHSESS GSVHVTAGMI RISNMTLAAD SSMGWSYDKN 600 GNLNVILSFG VVQRDDELNA TGSKTGTTET RAMLIFMCLW VLVLSVSFKI GTMVSAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-44 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-44 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-44 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-44 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-44 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-44 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-44 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g005610.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY099609 | 0.0 | AY099609.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds. | |||
GenBank | AY128859 | 0.0 | AY128859.1 Arabidopsis thaliana putative protein (At5g04410) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010490950.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like isoform X3 | ||||
Refseq | XP_010490951.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like isoform X4 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | D7LXI4 | 0.0 | D7LXI4_ARALL; Uncharacterized protein | ||||
STRING | XP_010490949.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 0.0 | NAC domain containing protein 2 |