PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g005600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 399aa    MW: 45253.1 Da    PI: 6.0441
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g005600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.54.8e-48281591128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeel+++yLk+kv+gk+++l ++i evd yk+ePw+Lp+  k+k+++kewyfFs  dkky+tg+  +r+tk+gyW+ tgkdke++
  Csa20g005600.1  28 LAPGFRFHPTDEELITYYLKRKVQGKSMRL-DAIGEVDFYKHEPWNLPEhsKLKTRDKEWYFFSILDKKYSTGTCVKRVTKQGYWHVTGKDKEIH 121
                     579***************************.99**************9435889999************************************** PP

             NAM  94 skkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                     + +ge+   +g+ k+ vf+kgr+p g++t+Wvmheyrl
  Csa20g005600.1 122 RGDGEVsiaIGMMKIHVFHKGRSPYGRRTNWVMHEYRL 159
                     *86655677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-5323179IPR003441NAC domain
PROSITE profilePS5100552.65328179IPR003441NAC domain
PfamPF023651.1E-2430159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDRDSKKPYG ALPAPREVQV NAAAVTSLAP GFRFHPTDEE LITYYLKRKV QGKSMRLDAI  60
GEVDFYKHEP WNLPEHSKLK TRDKEWYFFS ILDKKYSTGT CVKRVTKQGY WHVTGKDKEI  120
HRGDGEVSIA IGMMKIHVFH KGRSPYGRRT NWVMHEYRLA ENDEGLQVDA YVLCKVFRKQ  180
NPGEPIESRY APFVEQEWDD DGERAVSPVP VVVDANRINE TQQIDDNNKE LDDKALKRSP  240
ILPHCDIDKE APLSLCVLNK QAPLPLVQYK RKRRVDSSEN PNSSSQMTQD HCSSSTATIV  300
DTSAAEPEPL TNSEQDAISV LKSGFGSMIE DLGNKQEEAV AEKVPATTSS LTKSIQDLMK  360
EKDEMVVLRE TQIRETIEAE ILINYLEDQI KTLRKGGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-412718419173NAC domain-containing protein 19
3swm_B4e-412718419173NAC domain-containing protein 19
3swm_C4e-412718419173NAC domain-containing protein 19
3swm_D4e-412718419173NAC domain-containing protein 19
3swp_A4e-412718419173NAC domain-containing protein 19
3swp_B4e-412718419173NAC domain-containing protein 19
3swp_C4e-412718419173NAC domain-containing protein 19
3swp_D4e-412718419173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g005600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495071.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A398AT042e-99A0A398AT04_BRACM; Uncharacterized protein
STRINGXP_010495071.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2022046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.11e-104NAC domain containing protein 77