PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g001780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 172aa    MW: 19231.1 Da    PI: 6.5054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g001780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-095292954
                    HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     r RR+ri ++f  L++++P  a      K++ +++L +A++Y+k L
  Csa20g001780.1 52 ARERRHRISDRFKVLQSMVPGgA------KMDTVSMLDEAIRYVKFL 92
                    699*****************966......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1484392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-1448106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-124996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-124998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.40E-134996No hitNo description
PfamPF000107.9E-75292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDHSNLRSQN PNSSSTTSTS SSPFHGHKSD TGCTKRSRST SMLSTDPQSV AARERRHRIS  60
DRFKVLQSMV PGGAKMDTVS MLDEAIRYVK FLKAQIWFHQ NVLVFLNDHE TTSSCTYSPA  120
TGEYEPTLFG YDEGCTHVNE TYSQGMPHTV MDSEYSPWFG PVDYEQERGS S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g001780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495035.11e-127PREDICTED: transcription factor bHLH140-like
SwissprotQ9M0418e-82BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A178UDM73e-88A0A178UDM7_ARATH; Transcription factor bHLH140-like protein
TrEMBLA0A384K8T23e-88A0A384K8T2_ARATH; Uncharacterized protein
STRINGXP_010495035.11e-127(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152901418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.16e-83APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]