PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g001780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 172aa MW: 19231.1 Da PI: 6.5054 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.9 | 2.1e-09 | 52 | 92 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P a K++ +++L +A++Y+k L Csa20g001780.1 52 ARERRHRISDRFKVLQSMVPGgA------KMDTVSMLDEAIRYVKFL 92 699*****************966......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.148 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.68E-14 | 48 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-12 | 49 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-12 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.40E-13 | 49 | 96 | No hit | No description |
Pfam | PF00010 | 7.9E-7 | 52 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MDHSNLRSQN PNSSSTTSTS SSPFHGHKSD TGCTKRSRST SMLSTDPQSV AARERRHRIS 60 DRFKVLQSMV PGGAKMDTVS MLDEAIRYVK FLKAQIWFHQ NVLVFLNDHE TTSSCTYSPA 120 TGEYEPTLFG YDEGCTHVNE TYSQGMPHTV MDSEYSPWFG PVDYEQERGS S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g001780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495035.1 | 1e-127 | PREDICTED: transcription factor bHLH140-like | ||||
Swissprot | Q9M041 | 8e-82 | BH140_ARATH; Transcription factor bHLH140 | ||||
TrEMBL | A0A178UDM7 | 3e-88 | A0A178UDM7_ARATH; Transcription factor bHLH140-like protein | ||||
TrEMBL | A0A384K8T2 | 3e-88 | A0A384K8T2_ARATH; Uncharacterized protein | ||||
STRING | XP_010495035.1 | 1e-127 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15290 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 6e-83 | APRATAXIN-like |
Publications ? help Back to Top | |||
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