PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20859s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | BES1 | ||||||||
Protein Properties | Length: 73aa MW: 8349.42 Da PI: 10.5218 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 164.6 | 6.1e-51 | 3 | 73 | 1 | 71 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrk 71 g+sgr+ptwkErEnnk+RERrRRai+akiy+GLRaqGnyklpk++DnneVlkALc eAGw+vedDGttyrk Csa20859s010.1 3 GSSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRK 73 689*******************************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.8E-45 | 4 | 73 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
GGGSSGRTPT WKERENNKKR ERRRRAITAK IYSGLRAQGN YKLPKHCDNN EVLKALCLEA 60 GWIVEDDGTT YRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 6e-25 | 7 | 73 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 6e-25 | 7 | 73 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 6e-25 | 7 | 73 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 6e-25 | 7 | 73 | 372 | 438 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20859s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161590 | 4e-91 | AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86. | |||
GenBank | AY050394 | 4e-91 | AY050394.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. | |||
GenBank | AY097357 | 4e-91 | AY097357.1 Arabidopsis thaliana AT4g36780/C7A10_580 mRNA, complete cds. | |||
GenBank | CP002687 | 4e-91 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z99708 | 4e-91 | Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432137.2 | 9e-47 | PREDICTED: LOW QUALITY PROTEIN: BES1/BZR1 homolog protein 2 | ||||
Swissprot | Q94A43 | 2e-45 | BEH2_ARATH; BES1/BZR1 homolog protein 2 | ||||
TrEMBL | R0H0R8 | 1e-44 | R0H0R8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010432137.1 | 3e-46 | (Camelina sativa) | ||||
STRING | XP_010497285.1 | 3e-46 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15511 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36780.1 | 4e-34 | BES1/BZR1 homolog 2 |