PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g054580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 347aa    MW: 38819.6 Da    PI: 3.9255
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g054580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.11.5e-101349339
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    i  k  r v fskR +g+  KA E++ L dae+a++ 
  Csa19g054580.1 13 IGKKDSRAVAFSKRTKGLYSKAAEICLLADAEIAILA 49
                    667889****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.848348IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-9366IPR002100Transcription factor, MADS-box
CDDcd002666.40E-19581No hitNo description
SuperFamilySSF554556.02E-14578IPR002100Transcription factor, MADS-box
PfamPF003195.7E-101363IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGGVKRKIPI EMIGKKDSRA VAFSKRTKGL YSKAAEICLL ADAEIAILAT PVSSNSNASF  60
YSFGHSSVDN VVAAFLANQR PREDLGLGLG FWWEDERLAK SEDPEELRDA INSMSKMLQD  120
LKDSRFNALQ NRLDCEDVEK KGLLDGTHQN HTLNNPESCC DNENNYALLG NVDGCNQELL  180
DIDQIIHFEP TDQELLDIDQ IFNFESTSSS VNSQLENISM VTPNHQNSFS DSNAVVDEVH  240
TDLYDDNIHL SNLDEDLMLQ ISDNNCINNN VLSENFDEFI QELDLDHIFD FETNYMKSFE  300
MDDVSMVTTN SETVGDGGLV TDHIDLDEDN LCFSDYFNEL TSPAPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g054580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490384.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A178UP041e-116A0A178UP04_ARATH; AGL99
TrEMBLQ9LZ611e-116Q9LZ61_ARATH; AGAMOUS-like 99
STRINGXP_010490384.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.11e-121AGAMOUS-like 99