PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g053810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 283aa    MW: 32399.1 Da    PI: 8.7561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g053810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.33.9e-4681353128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                     pGfrFhPt+eel+++yLk+ v gk+ ++ evi  ++iy+++PwdLp  +   +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d++++s  
  Csa19g053810.1   8 PGFRFHPTEEELLDFYLKNMVYGKRSNV-EVIGFLNIYRHDPWDLPgLSRILGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISLs 101
                     9************************999.99***************533334789************************************9875 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++glkktLvfy+grap g+ktdWvm+e+r+
  Csa19g053810.1 102 ePKRVIGLKKTLVFYTGRAPGGSKTDWVMNEFRM 135
                     57778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-556153IPR003441NAC domain
PROSITE profilePS5100553.8056153IPR003441NAC domain
PfamPF023651.0E-248135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGKETELPGF RFHPTEEELL DFYLKNMVYG KRSNVEVIGF LNIYRHDPWD LPGLSRILGE  60
REWYFFVPRE RKHGNGGRPS RTTEKGYWKA TGSDRKIISL SEPKRVIGLK KTLVFYTGRA  120
PGGSKTDWVM NEFRMPDNCT LPKDVVLCKI YRKATSLKVL EQRAEMEAKM NQTCPNSPLP  180
SSETISFVGK EESSMMMTSF RVPHESAMEE ANKILTLQEN AKNEEKQREA ENRETSSSLK  240
LPFGSLPELQ LPKQGVEWGP DQLLSISPWL QNLTPIVNLL NW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-44815619168NO APICAL MERISTEM PROTEIN
1ut4_B3e-44815619168NO APICAL MERISTEM PROTEIN
1ut7_A3e-44815619168NO APICAL MERISTEM PROTEIN
1ut7_B3e-44815619168NO APICAL MERISTEM PROTEIN
3swm_A3e-44815622171NAC domain-containing protein 19
3swm_B3e-44815622171NAC domain-containing protein 19
3swm_C3e-44815622171NAC domain-containing protein 19
3swm_D3e-44815622171NAC domain-containing protein 19
3swp_A3e-44815622171NAC domain-containing protein 19
3swp_B3e-44815622171NAC domain-containing protein 19
3swp_C3e-44815622171NAC domain-containing protein 19
3swp_D3e-44815622171NAC domain-containing protein 19
4dul_A3e-44815619168NAC domain-containing protein 19
4dul_B3e-44815619168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g053810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3618040.0AF361804.1 Arabidopsis thaliana At2g17040 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010489321.10.0PREDICTED: NAC domain-containing protein 35-like
SwissprotQ10S656e-87NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLR0I4C90.0R0I4C9_9BRAS; Uncharacterized protein
STRINGXP_010489321.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.10.0NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]