PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g048010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 689aa MW: 78205.9 Da PI: 4.6053

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g048010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	73.9	3e-23	211	303	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +q+ w+ eD + lL G+++f++ gks+ +d d+fy+ +k+s s++vs q + Ki +++kK++kk++k g+ ps k+ d k+fel +kiWg Csa19g048010.1 211 PQQFWTAEDGVRLLEGVLQFRSPGGKSYLQDKDGFYQSIKGSFSVDVSFAQCLAKIASIRKKYRKKQNK---GERPSALKPLDLKAFELYEKIWG 302 6899***************************************************************...********************9 PP DUF573 98 s 98 + Csa19g048010.1 303 K 303 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.8E-20	212	302	IPR007592	Protein of unknown function DUF573
Gene3D	G3DSA:3.20.20.80	4.6E-22	430	511	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	8.71E-15	431	659	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	5.3E-17	563	672	IPR013781	Glycoside hydrolase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MATSNDSSSN ESSSEEESRP STLQMKPVEQ SAEEDDSEKD ESTKAQAEVV SEKVASSEEE 60 EESAEEESAE EESSEEESSE EESSKDDLEQ KEKESSKEDL EQKEKESSKE DLVEAAKKVS 120 EEEESAAEDR NGEESCEEDE SSKEDLVEAS AKKVSEEEES AAEDSNGEES CEEEVPSKKA 180 QICVSGKRRL SEGQQLDDMI AAKKQKTKLV PQQFWTAEDG VRLLEGVLQF RSPGGKSYLQ 240 DKDGFYQSIK GSFSVDVSFA QCLAKIASIR KKYRKKQNKG ERPSALKPLD LKAFELYEKI 300 WGKGTNAAQD SRSDGIQKQD VDGDWFSNYV LFPLVADHGM GGDAVKMAWA QVPDEKKREM 360 MHRWSTFKAK EDETCCSPAE TLLHIFAWEL INEPRCMSDV SGDTLQISPA RVDERVFKSL 420 FKWDDPQFGG FVKRNGTQFV VDGKALYVNG WNSYWFMDHA VNDHSRHRVG AMLEAGAKMG 480 LTVCRTWAFN DGGYNALQIS PGRFDERVFK SVTGSCFKFK AWKLEESAAF VIVCNAYFKA 540 NWFQDLHHLV HSEFLSLLVL PWIMFVVKWM LSHTEDGDKE LKKPVLFTEF GLSNLNKDYD 600 PSQRDRFYRT IFDIIYKSAK RRRSGAGTLM WQFLIQGMER FNDDFGIVPW EQGSIQRLMM 660 EHSCRLGRVT GRHLLQDNKS IDMCSQRP*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MATSNDSSSN ESSSEEESRP STLQMKPVEQ SAEEDDSEKD ESTKAQAEVV SEKVASSEEE  60
EESAEEESAE EESSEEESSE EESSKDDLEQ KEKESSKEDL EQKEKESSKE DLVEAAKKVS  120
EEEESAAEDR NGEESCEEDE SSKEDLVEAS AKKVSEEEES AAEDSNGEES CEEEVPSKKA  180
QICVSGKRRL SEGQQLDDMI AAKKQKTKLV PQQFWTAEDG VRLLEGVLQF RSPGGKSYLQ  240
DKDGFYQSIK GSFSVDVSFA QCLAKIASIR KKYRKKQNKG ERPSALKPLD LKAFELYEKI  300
WGKGTNAAQD SRSDGIQKQD VDGDWFSNYV LFPLVADHGM GGDAVKMAWA QVPDEKKREM  360
MHRWSTFKAK EDETCCSPAE TLLHIFAWEL INEPRCMSDV SGDTLQISPA RVDERVFKSL  420
FKWDDPQFGG FVKRNGTQFV VDGKALYVNG WNSYWFMDHA VNDHSRHRVG AMLEAGAKMG  480
LTVCRTWAFN DGGYNALQIS PGRFDERVFK SVTGSCFKFK AWKLEESAAF VIVCNAYFKA  540
NWFQDLHHLV HSEFLSLLVL PWIMFVVKWM LSHTEDGDKE LKKPVLFTEF GLSNLNKDYD  600
PSQRDRFYRT IFDIIYKSAK RRRSGAGTLM WQFLIQGMER FNDDFGIVPW EQGSIQRLMM  660
EHSCRLGRVT GRHLLQDNKS IDMCSQRP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1rh9_A	2e-14	431	670	6	373	endo-beta-mannanase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g048010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006234	7e-86	AC006234.4 Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence.
GenBank	AK228569	7e-86	AK228569.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-32-B17.
GenBank	BT008596	7e-86	BT008596.1 Arabidopsis thaliana clone RAFL15-32-B17 (R20994) putative glycosyl hydrolase family 5 protein/cellulase ((1-4)-beta-mannan endohydrolase) (At2g20680) mRNA, complete cds.
GenBank	BT025988	7e-86	BT025988.1 Arabidopsis thaliana At2g20680 mRNA, complete cds.
GenBank	CP002685	7e-86	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20482	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66420.1	3e-22	DNA-binding storekeeper protein-related transcriptional regulator