PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g046640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 299aa    MW: 33918 Da    PI: 10.1898
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g046640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.6e-2019113199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ff +l + +v+++++  lp +f+++++  ke s ++++++++grsWev +  +k+++ y+++ +GW++Fv++n L   +f++F+++++++f  +v
  Csa19g046640.1  19 FFMILQTVNVSSECMRALPHDFTRSFSD-KELSCKMKIRTQWGRSWEVGI--SKNPRFYFMEmSGWEKFVSDNALGHSEFITFTHKRKMDF--TV 108
                     778899999**************99964.57899****************..******77776*********************9998999..99 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                      +f++
  Csa19g046640.1 109 NIFKQ 113
                     99875 PP
2B3376.2e-122182951594
                     -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      l +pk+ a+ h ++k ++ t ++ +++g rsW+v++  r +++  ++++GW + +k+  L +g ++ F+l++ +e  lvv
  Csa19g046640.1 218 YLLIPKSVANYHHMPK-KKATFKIHHPDGkRSWDVTYLLRETQD--IFSAGWLRLCKDYPLAVGNTCEFTLIKPKELLLVV 295
                     489******8776665.557********999******6555554..5899*********************9876665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1814115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1814118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-1818112No hitNo description
PfamPF023625.0E-1819113IPR003340B3 DNA binding domain
PROSITE profilePS5086313.54919114IPR003340B3 DNA binding domain
SMARTSM010192.7E-1919114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-14199294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-13200293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.77204298IPR003340B3 DNA binding domain
CDDcd100179.16E-9204294No hitNo description
SMARTSM010195.9E-10206298IPR003340B3 DNA binding domain
PfamPF023628.7E-9218296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTRNSDFLGA IKERNNGSFF MILQTVNVSS ECMRALPHDF TRSFSDKELS CKMKIRTQWG  60
RSWEVGISKN PRFYFMEMSG WEKFVSDNAL GHSEFITFTH KRKMDFTVNI FKQDGKEMIQ  120
PPQPAAFLAS SSSIKIEQEG DDKREEVVVP SELSNRGRTT AAESNGRELK FGKKPAEGSQ  180
SSKRAEKLVF PGRGSPGASS STAFKFTIII KKPYLLQYLL IPKSVANYHH MPKKKATFKI  240
HHPDGKRSWD VTYLLRETQD IFSAGWLRLC KDYPLAVGNT CEFTLIKPKE LLLVVSIP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g046640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133946e-69AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBankCP0026886e-69CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488975.10.0PREDICTED: B3 domain-containing protein At2g16210-like
SwissprotQ5BPT71e-122Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L1431e-134D7L143_ARALL; Transcriptional factor B3 family protein
STRINGXP_010488975.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-124B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]