PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g046490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 30106.3 Da PI: 4.4285 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.3 | 9.2e-30 | 1 | 128 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 f+F P+deel +yLk+ ++k +++ i++v+iyk++P +L ++++ +++ew+f ++r+k ++gk++nr + gyW+at k++++ Csa19g046490.1 1 FKFTPSDEELFINYLKPFSPDRKyyyPPFNIPIHHVNIYKSNPYQLSVEFEKgNDEEWFFVTERNKIGKNGKKQNRgDDSGGYWNATVGAKQIYA 95 89****************99999886555445**************96555426779999999999999*******88889************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg + L + gr p+g+ktdW+mhey + Csa19g046490.1 96 -GQDDVGYVTALEYCVGRPPNGVKTDWLMHEYWF 128 .999****************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-35 | 1 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-13 | 1 | 126 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.449 | 1 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
FKFTPSDEEL FINYLKPFSP DRKYYYPPFN IPIHHVNIYK SNPYQLSVEF EKGNDEEWFF 60 VTERNKIGKN GKKQNRGDDS GGYWNATVGA KQIYAGQDDV GYVTALEYCV GRPPNGVKTD 120 WLMHEYWFES SSDDNDKVDY ALCKIYLTPS AVKRMKAEKK EKLKKGKGVS KEEVKQLDLQ 180 HQQDQSQLQQ PHDSLLPAQQ HEPQPQPPVI PDDDNFDDFD ELPEDFKDFL AQLMKPDSLD 240 GDEQPDDSDF LQGFITDGME * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-19 | 1 | 154 | 21 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-19 | 1 | 154 | 21 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-19 | 1 | 154 | 21 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-19 | 1 | 154 | 21 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-19 | 1 | 154 | 24 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-19 | 1 | 154 | 24 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-19 | 1 | 154 | 24 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-19 | 1 | 154 | 24 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-19 | 1 | 154 | 24 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-19 | 1 | 154 | 24 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-19 | 1 | 154 | 24 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-19 | 1 | 154 | 24 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-19 | 1 | 154 | 21 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-19 | 1 | 154 | 21 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g046490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019096491.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | D7LVH1 | 7e-74 | D7LVH1_ARALL; Uncharacterized protein | ||||
STRING | XP_010490255.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 2e-55 | NAC domain containing protein 64 |